Zues currently lacks the waypoint editing capability that we see in the ArmA 3 mission editor. The ability to select waypoint type ("GET OUT","UNLOAD TRANSPORT",etc) would make missions much more dynamic and interesting. Combat mode, movement speed, and behavior are not as nearly as important, they don't need to be stressed over as much.
What can be said is it is currently impossible for the Zeus to order an AI squad to get in a vehicle and unload them at their destination. Something that would allow this is desperately needed.