Fixed, but with some things to do !
I don't understand why BIS didn't it itself, it would be better for everybody who want to try those tools.

Thus, for those who want to launch Arma 3 tools without installing nothing else, follow this :

1- define your own directory as "P:" , like this : http://tom4897.info/blog/2014/06/arma-3-tools-p-drive-devp/

2- set your setting.ini like this for example : http://forums.bistudio.com/showthread.php?175729-Prepare-P-Drive-not-working-cannot-find-registry-key-or-value-error&p=2815981&viewfull=1#post2815981

3- If you have still some problems, read this : http://forums.bistudio.com/showthread.php?184340-cant-use-some-controls-hotkeys-in-buldozer&p=2816021&viewfull=1#post2816021

Same problem here ! and i unable to find the problem ! When i remove all missions except 2 or 3 files, it's OK ! But after, i can't find the wrong file !

Same for me!! O_o ...

Yes, you're right !

it's a shame for me, but i did never see that before!

You must set the empty vehicle on "unlocked" before!...

Sorry for this useless feedback!

I'd like to delete it! i can?

ok! I found.. it's not a problem with respawn, but with "pythos" island!... I will report it in another feedback!..
thx all!
you can close this one. ;)

And since the Beta, this command doesn't delete all item in ammobox!

For example, in the supply box, when you do this command in the init, you will see that the firstaid is not removed!

It's the same with a little script to custom your box!

This problem is only on a dedicated server for me!!
On a pc, in editor or in MP, everything is good, but when you do it on a dedicated server = problems!

Thx a lot TheBlueYowie!!!... very helpful ;)