In v1.66, some proxy p3ds were removed.

While some of the p3ds have been re-added in the dev branch...
https://forums.bistudio.com/topic/140837-development-branch-changelog/?p=3126896

It seems you have missed the following ones
a3\structures_f\ind\factory\factory_main_part2_f.p3d
a3\structures_f\mil\cargo\cargo_tower_v2_addon_f.p3d

These are used in esseker map
http://steamcommunity.com/sharedfiles/filedetails/?id=498101407&searchtext=